PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0184100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 427aa    MW: 46283.9 Da    PI: 4.4074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0184100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.7e-07398424329
                        HHHHHHHHHHHHHHHHHHHHHHCTSCC CS
                HLH   3 rahnerErrRRdriNsafeeLrellPk 29 
                        ++h + ErrRR+++N+ f  L++++P+
  ORGLA04G0184100.1 398 KNHVMSERRRREKLNEMFLILKSVVPS 424
                        5899**********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-5013196IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.417395427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.20E-7398427No hitNo description
SuperFamilySSF474591.45E-7398426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-6398425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-4399424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEETPLPSGK NFRSQLAAAA RSINWTYAIF WSISTSRPGV LTWKYGFYNG EIKTRKITNS  60
MNLTADELVL QRSEQLRELY DSLLSGECGH RARRPVAALL PEDLGDTEWY YVVCMTYAFG  120
PGQGLPGKSF ASNEFVWLTN AQSADRKLFH RALIAKSASI KTIVCVPFIM HGVLELGTTD  180
PISEDPALVD RIAASFWDTP PRAAFSSEAG DADIVVFEDL DHGNAAVEAT TTTVPGEPHA  240
VAGGEVAECE PNADNDLEQI TMDDIGELYS LCEELDVVRP LDDDSSSWAV ADPWSSFQLV  300
PTSSPAPDQA PAAEATDVDD VVVAALDVSS IDGSCRPSPS SFVAWKRTAD SDEVQAVPLI  360
SGEPPQKLLK KAVAGAGAWM NNGDSSAAAM TTQGSSIKNH VMSERRRREK LNEMFLILKS  420
VVPSIHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-222419623192Transcription factor MYC3
4rqw_B8e-222419623192Transcription factor MYC3
4rru_A1e-212419262227Transcription factor MYC3
4rs9_A8e-222419623192Transcription factor MYC3
4ywc_A1e-212419262227Transcription factor MYC3
4ywc_B1e-212419262227Transcription factor MYC3
4yz6_A8e-222419623192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1403408ERRRRE
2404409RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankOSU398600.0U39860.1 Oryza sativa transcriptional activator (Ra) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635227.10.0PREDICTED: anthocyanin regulatory Lc protein
SwissprotP135261e-129ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLI1PNS20.0I1PNS2_ORYGL; Uncharacterized protein
STRINGORGLA04G0184100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.33e-63bHLH family protein